Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922953.1_cds_XP_016471694.1_64001
CDS Infomation

[gene=LOC107793770] [db_xref=GeneID:107793770] [protein=E3 ubiquitin-protein ligase BRE1-like 2 isoform X2] [protein_id=XP_016471694.1] [location=complement(join(17211..17342,17683..17845,18533..18735,18819..18956,19071..19157,19238..19310,19764..19958,20442..20518,20605..20676,21275..21435,21515..21701,21782..21901,22019..22102,22178..22371,22835..23002,23181..23382))] [gbkey=CDS]
Sequence

ATGTTCCTGTGTAGGGTGTTGAAAACCAATGATATTCCAGGCGACGCCAATGCTGGATCC
ATTGTGAATATCAAGGAAGCTCTTGATCTGCGCCATTCTTCTACTCTTGAGTTGATGAAA
TCGTTGGAAAACGCTATTGATGCTCAGCGTATTAAAACTGAAAATCTTACTCATGTTTTG
GAAGGAAAGCCATCAGCAGAAGATGCTATCATTCTTTTAAGTAAGATCGATGATATGATG
AAAGATGAGGCTAATTATCTCCGTCAAGTAATTGATGTTCTTCATTTGAAACACAAAGAA
TATGCTGATGCAATCGAAGCTTGTAATCAAAGCCATTCAGTGGATCAATCTGAGTTAAAG
CGCCTTGAAGGTGAGCTGGAGGAAAGCATGTCAGAACTTGAAGATAGTAGAAGGAAGTTA
GTTACTCTGAAAATGCAGAAAGATTTGGCATCTGGGGGGCAGGTAACAGTTTCAAGTGCG
GTAAATGGTAGTATGTCACCAGAGAAGCCTACAGACCGAACAAAAGGTGTGCGGGAACTG
AAGGAGTCTATAGAAGAGGCAAAGGCGCTGAAAGAGGACCGCCTCTCTGAGCTTCAAGAT
GCCCAGGAAGATAATCTACATTTGTTGAAGCAGTTGCAAGATCTTCAGAATGAACTAAAG
GATGACAGATACGTGTCTTCATCTCGTGCTTATACCTTACTCCATGATCAACGTCACCAT
TGGAATGCTGAGGCAGAGCGATACAAAGCTCTGACAGACTCTCTTCAGGCTGACAGGTCT
TTCATCGTACGGAAGGAGAAAGAACTGGTTATGAAAGCAGAGGCTATGGATTCAGCAAGG
AAAGCAGTTGATAACTCCGAGTCAAGGATTGAGGAATTGGAGCATCGCATGCACAGATGC
ATTATTGGAAAAAATGAGCTGGAAATCAAAATGGAAGAAGCAATTCAAGATGCAGGAAGA
AAAGACATTAAAGAGGAGTTTCAGGTGATGGGCTCTGCTTTATCAAAAGAAATACAAATG
ATGGAAGCTCAGCTGAATCGTTGGAAGGAGACAGCTAAGGAAGCTGTTTCCTTACGTGAA
GAAAGACAGTCATTGGAAGCTTCAATAGGAAGAAAGGCTACTGAGCACAAAAACTTGATC
AATAAATGTGCTCACCAGACTGGGGAGATCCGAACGCTAAAGGAACTTGCTGAGAAGATG
CAGAGGGACAAACAGGAACGTCAAATATTCTTGGACATGCTTGGCCAGCAAATCTATGAC
AACAGAGACATAACGGAAATCAGAGAGTCGGAGAAAAGAGCTCACGCACAAGCTGAAATT
TTGAGAGCTGCTTTGAATGAACATGATTTGGAATTGAGAGTGAAAGCTGCTAATGAAGCT
GAGGCTGCTTGTCAGCAGAGGCTTTCCGCTGCTGAGGCAGAAATTGCAGAATTGAGGGCA
GAACTGGATGCTTCTGACAGAGGTGTTTTAGAGCTAAGAGAAGCGATAAAAATAAAAGAA
GGGGAATCAGAAACTTATATTTCCGAGATTGAGACTATTGGTCAAGCCTATGAAGACATG
CAGACACAGAACCAACATCTTCTCCAGCAGCTGGCAGAGAGAGATGATTATAACATAAAG
TTAGTATCTGAGAGCGTGAAGATAAAGCAGGAACAAAGCTTGCTTCTCTCTCGGAAGCAG
GTATCAACAGGTAAACTTCAAAAGGCTAAAACATCACTGGAATCTCTGAAAATGAGGATG
GCTCAAAGTGAAGACCAGATGAAAGTTCACATCACGGAAGCTTTAAGTTATATCCAAGAA
GATAGACATCTTGCAGTCACCCTGGAAACTGCCAAGCGAGAATTGGGAGATGCTGATAAG
GAATTGAAGTGGCTGAGATCTGCTGCTTCCTCCGCTGATAAGGAATACGAACAGCTCAAG
AGGAAGTTGGCCGAAATAGGGGTGGAGCTGGGAACTGAAAGGAGTGAGAAAAAGAAGCTT
GATGAAGAGGCAGTGGAGTTGAACAGAACTGTTGATGAGTTGACTTCTGCAAGTGGCGAG
GCTGCAGTACAAAAACTGCAGGATGAAATCAATGATTGCAAGGCTATTCTCAAATGTGGA
GTGTGTCTTGATCGGCCAAAAGAGGTTGTAATCACAAAATGTTATCATCTCTTCTGCAAT
CCATGTATTCAGAGAAATTTAGAGATTCGTCATCGCAAGTGCCCTGCTTGTGGAACTGCT
TTTGGACAAAACGATGTTCGTTTTGTGAAAATCTGA

Peptide Sequence

PEP ID

XP_016471694.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X2 [Nicotiana tabacum]
Sequence

MFLCRVLKTNDIPGDANAGSIVNIKEALDLRHSSTLELMKSLENAIDAQRIKTENLTHVL
EGKPSAEDAIILLSKIDDMMKDEANYLRQVIDVLHLKHKEYADAIEACNQSHSVDQSELK
RLEGELEESMSELEDSRRKLVTLKMQKDLASGGQVTVSSAVNGSMSPEKPTDRTKGVREL
KESIEEAKALKEDRLSELQDAQEDNLHLLKQLQDLQNELKDDRYVSSSRAYTLLHDQRHH
WNAEAERYKALTDSLQADRSFIVRKEKELVMKAEAMDSARKAVDNSESRIEELEHRMHRC
IIGKNELEIKMEEAIQDAGRKDIKEEFQVMGSALSKEIQMMEAQLNRWKETAKEAVSLRE
ERQSLEASIGRKATEHKNLINKCAHQTGEIRTLKELAEKMQRDKQERQIFLDMLGQQIYD
NRDITEIRESEKRAHAQAEILRAALNEHDLELRVKAANEAEAACQQRLSAAEAEIAELRA
ELDASDRGVLELREAIKIKEGESETYISEIETIGQAYEDMQTQNQHLLQQLAERDDYNIK
LVSESVKIKQEQSLLLSRKQVSTGKLQKAKTSLESLKMRMAQSEDQMKVHITEALSYIQE
DRHLAVTLETAKRELGDADKELKWLRSAASSADKEYEQLKRKLAEIGVELGTERSEKKKL
DEEAVELNRTVDELTSASGEAAVQKLQDEINDCKAILKCGVCLDRPKEVVITKCYHLFCN
PCIQRNLEIRHRKCPACGTAFGQNDVRFVKI

Transcript Sequence

Gene sequence data has not been registered.